Bioinformatics Tutorials

Bioinformatics tutorials provided by Tufts Research Technology.

Bioinformatics tools guide

An overview of the bioinformatics tools currently available Tufts cluster, organized by specific research areas.

bioinformatics-tools-guide.html

Parallel read alignment with slurm

An overview of running read alignment in parallel using the SLURM job scheduler.

parallel-read-alignment.html

Running nfcore pipelines at Tufts HPC

How to run nf-core pipelines on Tufts HPC.

running-nfcore-pipelines.html

Using singularity in bioinformatics

Introduction to biocontainers and singularity.

using-singularity.html

Using Python Packages with Jupyter Notebook

Exploring Python Bioinformatics Packages with Jupyter Notebook.

exploring-python-bioinformatics.html

scRNA-seq in Python

Set Up Conda Environment and Create Jupyter Kernel for scRNA-seq Analysis.

set-up-conda-environment.html

scRNA-seq in R

scRNA-seq analysis with RStudio.

sc-rna-seq-analysis-with-r.html

Parallel Computing in R for Bioinformatics

Parallel Computing in R for Bioinformatics.

parallel-computing-in-r.html

Package installation using container-mod

Creating modulefiles for containers.

container-mod.html

Differential Expression Analysis with DESeq2 using OOD RStudio

Differential Expression Analysis with DESeq2 using OOD RStudio

de-seq2-in-r-ood.html