Bioinformatics Databases

Tufts Research Technology provides a set of centrally-maintained scientific reference databases for HPC users. Below is a list of the datasets available. To request a new dataset or an update, please contact us at tts-research@tufts.edu.

Alphafold

Sequence databases required for alphafold v2

alphafold.html

Biobakery

Reference database for biobakery workflows

biobakery.html

Diamond

NCIB nr database for Diamond

diamond.html

Genomad

Genomad databases

genomad_db.html

iGenomes

Ready-to-use reference sequences and annotations from Illumina

igenomes.html

Kraken2

Refseq databases for taxonomic assignment of meta-genomics sequencing reads

kraken2.html

Metaphlan

Metaphlan database files

metaphlan.html

NCBI Blast

NCBI blast databases

ncbi.html