Bioinformatics Workshops#

Training workshops on bioinformatics provided by TTS Research Technology.

2026 Spring#

Version Control & Programming:

Reproducible environment:

  • Reproducible and Portable Scientific Computing on HPC with Containers - Register · Workshop Materials

  • Mastering Conda Environments for Reproducible Research - Register

HPC & Workflow Automation

R & RStudio on HPC:

  • From Terminal to Browser: R and RStudio on HPC - Register

  • From Code to Report: Reproducible Data Analysis with R Markdown - Register · Slides · Workshop Materials

  • Building Reproducible Parallel Workflows in RStudio on the HPC - Register

2025#

Getting started with Bioinformatics on Tufts HPC - Fall

User guide to help users get started on running bioinformatics analysis on Tufts HPC.

https://zhan4429.github.io/Intro_to_bioinfor_2025fall/

Introduction to Git and GitHub - Spring

This workshop is designed to provide participants with a foundational understanding of version control using Git and GitHub Desktop.

intro-to-git-github.html

Introduction to Singularity - Spring

This workshop is designed to introduce users how to use singularity to run applications on HPC.

intro-to-singularity/index.html

Beginner’s Guide to Bioinformatics - Spring

User guide to help users get started on running bioinformatics analysis on Tufts HPC.

intro-to-bioinfo/index.html

2024#

Tufts Bioinformatics Workshop Series - Fall

Slides and hands-on sessions for bioinformatics workshop series.

https://tuftsdatalab.github.io/tuftsWorkshops/2024_workshops/2024_bioinformatics_workshop_agenda/

Introduction to nextflow and nf-core - Spring

Slides and hands-on sessions for nf-core and nextflow training workshops.

https://tuftsdatalab.github.io/tuftsWorkshops/2024_workshops/nfcore_rnaseq_sp24/00_introduction/

Pulling, running and building containerized HPC applications - Spring

Slides and Hands-on sessions for biocontainer workshops.

https://github.com/zhan4429/TuftsContainers.github.io

Archived#

Training workshops on bioinformatics provided by Data Intensive Studies Center (DISC).

Introduction To Single-Cell RNA-Seq Bioinformatics – 2023

Materials for scRNA-Seq workshop

https://best-tufts.github.io/intro_to_single_cell_rnaseq/intro_to_single_cell_rnaseq/00_background/

Introduction To Trajectory Analysis – 2023

Materials for Trajectory Analysis workshop

https://best-tufts.github.io/intro_to_trajectory_analysis/trajectoryAnalysis/00_background/