Tufts University Research Technology Guides

Command Line Interfaces

Learn about terminal, shell, and Command Prompt

High-Performance Computing

Getting started on Tufts HPC Cluster

Bioinformatics

Discover Bioinformatics applications and tutorials

Python

Kickstart or grow your Python skills

R

Kickstart or grow your R skills

GIS and Remote Sensing

Get started with GIS, mapping, remote sensing, and drones

Digital Humanities and NLP

Get started with computational text analysis and NLP

Statistics

Getting started with statistics

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Command Line Interfaces

• CLI
  • • Instructor Notes
      • Setup
      • Introducing the Shell (10:10)
      • Navigating Files and Directories (10:50)
      • Working With Files and Directories (11:30)
      • Pipes and Filters
      • Loops
      • Shell Scripts
      • Finding Things

High-Performance Computing

• HPC
  • Getting started
  • Getting help
  • Table of Contents
  • Request Access
    • Cluster Account Request
    • Cluster Storage Request
  • Modules
    • What are modules?
    • How to use modules?
    • Install Software/Packages
  • File Recovery on Tufts HPC Cluster
    • Find Snapshots
    • Locate Missing Files/Directories
    • Recovery Files/Directories
  • Running R on the HPC cluster
    • R Interactive Session
    • R batch jobs
    • RStudio Interactive App on OnDemand
      • Launch RStudio
      • Debug OnDemand RStudio Pax
  • GPU Resources on Tufts HPC Cluster
    • GPUs

Bioinformatics

• Bioinformatics

Python

• Python

R

• R

Geographical Information Science and Remote Sensing

• GIS+RS

Digital Humanities and Natural Language Processing

• DH+NLP
  • A Gentle Introduction to Natural Language Process
    • Our overall task
    • Goals
    • General methods
      • Read in our data
        • The requests library
      • Tokenization
        • Sentence-level tokenization
        • Word-level tokenization
      • Visualization
    • Generalizing
    • Specific Application
    • Reviewing what we learned
  • Thanks for reading

Statistics

• Statistics