---
tags: bioinformatics
---

# Bioinformatics Databases

Tufts Research Technology provides a set of centrally-maintained scientific reference databases for HPC users. Below is a list of the datasets available. To request a new dataset or an update, please contact us at {{ email }}.

```{gallery-grid}
---
grid-columns: 1
---
- header: "{fas}`dna` Alphafold"
  content: "Sequence databases required for alphafold v2"
  link: "alphafold.html"

- header: "{fas}`dna` Biobakery"
  content: "Reference database for biobakery workflows"
  link: "biobakery.html"

- header: "{fas}`dna` Diamond"
  content: "NCIB nr database for Diamond"
  link: "diamond.html"

- header: "{fas}`dna` Genomad"
  content: "Genomad databases"
  link: "genomad_db.html"

- header: "{fas}`dna` iGenomes"
  content: "Ready-to-use reference sequences and annotations from Illumina"
  link: "igenomes.html"

- header: "{fas}`dna` Kraken2"
  content: "Refseq databases for taxonomic assignment of meta-genomics sequencing reads"
  link: "kraken2.html"

- header: "{fas}`dna` Metaphlan"
  content: "Metaphlan database files"
  link: "metaphlan.html"

- header: "{fas}`dna` NCBI Blast"
  content: "NCBI blast databases"
  link: "ncbi.html"

```